How Do You Spell APYRIMIDINIC SITE?

Pronunciation: [ɐpˌɪɹɪmɪdˈɪnɪk sˈa͡ɪt] (IPA)

The term "apyrimidinic site" refers to a location on a DNA molecule where a pyrimidine base (Cytosine or Thymine) has been lost or removed. The correct pronunciation of this scientific term is [a-pye-ri-mi-din-ik] [sahyt]. The word begins with a prefix "a-" that means "not" or "without," followed by "pyrimidinic," which is a chemical term derived from pyrimidine. The IPA transcription shows that the primary word stresses are on the third and fifth syllables: "mi" and "ik."

APYRIMIDINIC SITE Meaning and Definition

  1. An apyrimidinic site, also known as an AP site, refers to a lesion or a gap in a DNA molecule where a pyrimidine base (thymine or cytosine) is missing. This site is created when the DNA molecule undergoes a process called depurination, which results in the removal of purine bases (adenine or guanine) from the DNA strand. If not promptly repaired, this depurination can lead to the formation of an apyrimidinic site.

    Apyrimidinic sites are a result of chemical damage or spontaneous hydrolysis of the DNA molecule, and they can also be induced by various environmental factors such as exposure to certain chemicals or ultraviolet (UV) radiation. These sites are significant because they can disrupt the normal functioning and stability of DNA, potentially leading to mutations, genetic instability, and diseases.

    DNA repair mechanisms, such as base excision repair (BER), are responsible for the recognition and repair of apyrimidinic sites. In BER, enzymes called DNA glycosylases recognize and remove the damaged or missing base, creating an abasic or apurinic/apyrimidinic (AP) site. Subsequently, other proteins in the repair pathway cleave the sugar-phosphate backbone, replace the missing nucleotide, and seal the gap to restore the integrity of the DNA strand.

    Understanding apyrimidinic sites and the repair mechanisms involved is essential to comprehend the causes and consequences of DNA damage, as well as the development of therapies and strategies to prevent or repair such lesions.

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Etymology of APYRIMIDINIC SITE

The word "apyrimidinic" is a combination of the prefix "a-" meaning "not" or "without", and the adjective "pyrimidinic". "Pyrimidinic" refers to a molecule that contains a pyrimidine ring structure.

The term "apyrimidinic site" is commonly used in the field of molecular biology and DNA repair. In this context, an apyrimidinic site, also known as an AP site or an abasic site, refers to a location in DNA where a nucleotide base, such as adenine (A), guanine (G), cytosine (C), or thymine (T), is missing.

Therefore, the etymology of "apyrimidinic site" arises from the combination of "a-" meaning "not" or "without", and "pyrimidinic" referring to a molecule composed of a pyrimidine ring structure.

Plural form of APYRIMIDINIC SITE is APYRIMIDINIC SITES

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